Lipidomics of a randomized crossover trial

©️ Nara Marella

Summary

  • Fatty liver disease is caused by the accumulation of lipids, especially triacylglycerols
  • Disease phenotypes are regulated by the vagal nerve of the central nervous system
  • Characterized the lipid changes associated with vagal innervation in a clinical cohort using a randomized modified sham feeding experiment with human subjects
  • The targeted lipidomics assay comprised 350 lipid species, covering 21 lipid classes
    • Phospholipids (PC, PE, PS, PG)
    • Sphingolipids (SM, Cer)
    • Glycerolipids (DG, TG)
    • Cholesterylesters
  • Lipidomics data deposited to the EMBL-EBI MetaboLights database with the identifier MTBLS4231

LC-MS Method

  • Chromatographic separation of lipids was carried out on the UHPLC system equipped with a reversed phase based Accucore C18(2.6-μm,150×2mm) column
  • Mobile phase A contained acetonitrile/water (50/50-vol/vol) solution and phase B consisted of acetonitrile/isopropanol/water(10/88/2-vol/vol/vol), both phases containing 10mM ammonium formate and 10% formic acid. A gradient of mobile phase B was applied to ensure optimal separation of lipids
  • MS scan range set to 250–1200m/z for both +/- ionization mode
  • Fixed collision energy mode set to 35% and inclusion list was used to obtain tandem MS spectra
  • Data analysis was performed with TraceFinder software
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Nara C. Marella
Senior Data Scientist & Data Manager

Biomedicine, Informatics, Life Sciences, Algorithms, Advanced Therapy Medicinal Products, Drug Discovery, Research Data Management, Laboratory Information Management Systems, Data Science, Team Management, Natural Sciences, IT Consulting, Statistics, Metabolomics, Proteomics, Transcriptomics, Machine Learning, Artificial Intelligence, Quality Control, Programming, Python, R, Volunteering, Graphic Design, Teaching, Problem Solving

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